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STRINGSTRING
Phatr42643 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42643" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42643Predicted protein (1238 aa)    
Predicted Functional Partners:
Phatr43596
Predicted protein (779 aa)
     
 
  0.927
Phatr15121
Predicted protein (450 aa)
     
   
  0.809
hNpl4
Predicted protein (473 aa)
     
 
  0.691
Phatr48912
Predicted protein (825 aa)
     
   
  0.683
Phatr30486
Predicted protein; Belongs to the universal ribosomal protein uS13 family (146 aa)
       
 
  0.671
rpl2
Predicted protein (257 aa)
       
 
  0.664
Phatr24748
Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs (413 aa)
   
 
  0.649
Phatr50753
Predicted protein (202 aa)
     
   
  0.582
rpl14
Predicted protein; Belongs to the universal ribosomal protein uL14 family (143 aa)
   
      0.581
Phatr11032
Predicted protein (115 aa)
     
 
  0.572
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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