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Phatr42729 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42729" - Ubiquitin carboxyl-terminal hydrolase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42729Ubiquitin carboxyl-terminal hydrolase (1003 aa)    
Predicted Functional Partners:
helicase_7
Predicted protein (422 aa)
     
      0.652
Phatr41756
Predicted protein (651 aa)
     
      0.652
Phatr46292
Predicted protein (772 aa)
     
 
  0.583
Phatr43105
Predicted protein (455 aa)
     
      0.530
Phatr30365
Predicted protein; Involved in the biogenesis of the 60S ribosomal subunit (677 aa)
     
      0.530
H2B-1a
Histone H2B; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (116 aa)
       
 
  0.479
Phatr11823
Histone H2B (116 aa)
       
 
  0.479
Phatr26750
Ubiquitin carrier protein (153 aa)
       
 
  0.477
Phatr708
Predicted protein (511 aa)
     
      0.438
Phatr25133
Predicted protein (562 aa)
     
      0.414
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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