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STRINGSTRING
Phatr42732 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42732" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42732Predicted protein (408 aa)    
Predicted Functional Partners:
Phatr9929
Predicted protein (196 aa)
     
 
  0.954
Phatr13820
Predicted protein (282 aa)
     
 
  0.938
Phatr46837
Predicted protein (997 aa)
     
 
  0.937
Phatr17974
Predicted protein (475 aa)
     
 
  0.936
Phatr25666
Predicted protein (885 aa)
     
 
  0.935
BMS1
Ribosome biogenesis protein BMS1 (1096 aa)
     
 
  0.933
Phatr46994
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA (730 aa)
     
 
  0.918
Phatr11703
Predicted protein (820 aa)
     
 
  0.916
Phatr18258
Predicted protein (743 aa)
     
 
  0.909
Phatr43713
Predicted protein (609 aa)
     
 
  0.908
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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