Phatr42732 protein (Phaeodactylum tricornutum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Phatr42732

Predicted protein (408 aa)

Predicted Functional Partners:

BMS1

0.977

Phatr43713

0.974

Phatr51007

0.971

Phatr18258

0.971

Phatr43574

0.970

Phatr17974

0.967

Phatr21557

0.958

Phatr45888

0.950

Phatr25666

0.931

Phatr15757

0.915

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMS1	Phatr15757	Phatr42831	Phatr15757	Ribosome biogenesis protein BMS1	Predicted protein	0.815
BMS1	Phatr17974	Phatr42831	Phatr17974	Ribosome biogenesis protein BMS1	Predicted protein	0.998
BMS1	Phatr18258	Phatr42831	Phatr18258	Ribosome biogenesis protein BMS1	Predicted protein	0.989
BMS1	Phatr21557	Phatr42831	Phatr21557	Ribosome biogenesis protein BMS1	Predicted protein	0.699
BMS1	Phatr25666	Phatr42831	Phatr25666	Ribosome biogenesis protein BMS1	Predicted protein	0.993
BMS1	Phatr42732	Phatr42831	Phatr42732	Ribosome biogenesis protein BMS1	Predicted protein	0.977
BMS1	Phatr43574	Phatr42831	Phatr43574	Ribosome biogenesis protein BMS1	Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit	0.758
BMS1	Phatr43713	Phatr42831	Phatr43713	Ribosome biogenesis protein BMS1	Predicted protein	0.966
BMS1	Phatr45888	Phatr42831	Phatr45888	Ribosome biogenesis protein BMS1	Predicted protein	0.903
BMS1	Phatr51007	Phatr42831	Phatr51007	Ribosome biogenesis protein BMS1	Predicted protein	0.903
Phatr15757	BMS1	Phatr15757	Phatr42831	Predicted protein	Ribosome biogenesis protein BMS1	0.815
Phatr15757	Phatr17974	Phatr15757	Phatr17974	Predicted protein	Predicted protein	0.988
Phatr15757	Phatr18258	Phatr15757	Phatr18258	Predicted protein	Predicted protein	0.848
Phatr15757	Phatr21557	Phatr15757	Phatr21557	Predicted protein	Predicted protein	0.812
Phatr15757	Phatr25666	Phatr15757	Phatr25666	Predicted protein	Predicted protein	0.980
Phatr15757	Phatr42732	Phatr15757	Phatr42732	Predicted protein	Predicted protein	0.915
Phatr15757	Phatr43574	Phatr15757	Phatr43574	Predicted protein	Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit	0.970
Phatr15757	Phatr43713	Phatr15757	Phatr43713	Predicted protein	Predicted protein	0.909
Phatr15757	Phatr45888	Phatr15757	Phatr45888	Predicted protein	Predicted protein	0.890
Phatr15757	Phatr51007	Phatr15757	Phatr51007	Predicted protein	Predicted protein	0.998

page 1 of 6

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2018

Credits

Access

Info

About