STRINGSTRING
Phatr42736 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42736" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42736Predicted protein (355 aa)    
Predicted Functional Partners:
Phatr27240
Predicted protein (746 aa)
       
  0.666
Phatr34800
Predicted protein (387 aa)
   
  0.583
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
   
 
  0.566
Phatr54983
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (891 aa)
     
   
  0.523
ACC2
Biotin carboxylase (2282 aa)
   
 
  0.478
Phatr48862
Predicted protein (331 aa)
   
          0.477
Phatr22418
Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide (566 aa)
   
   
  0.475
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
         
  0.468
Phatr24739
Predicted protein (1594 aa)
         
  0.468
Phatr30823
Predicted protein (343 aa)
   
          0.451
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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