STRINGSTRING
Phatr42743 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42743" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42743Predicted protein (669 aa)    
Predicted Functional Partners:
FUM1
Precursor of fumarase fumarase (567 aa)
   
   
  0.664
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
     
   
  0.552
Phatr24739
Predicted protein (1594 aa)
     
   
  0.552
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
              0.487
Phatr23164
Predicted protein (489 aa)
     
 
  0.438
Phatr49253
Predicted protein (566 aa)
   
   
  0.431
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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