STRINGSTRING
Phatr42826 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42826" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42826Predicted protein (1192 aa)    
Predicted Functional Partners:
Phatrdraft509
Predicted protein (308 aa)
       
 
  0.887
Phatr12921
Predicted protein (240 aa)
       
 
  0.887
Phatr48173
Predicted protein (764 aa)
       
 
  0.867
Phatr23286
Predicted protein (274 aa)
     
 
  0.828
Phatr16766
Predicted protein (140 aa)
     
 
  0.828
Phatr12322
Predicted protein (212 aa)
     
 
  0.828
RRP
Ribosomal RNA processing protein (354 aa)
       
 
  0.818
Phatr16560
Predicted protein (269 aa)
       
 
  0.818
Phatr16725
Predicted protein (115 aa)
     
 
  0.743
Phatr9855
Predicted protein (358 aa)
   
 
  0.565
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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