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STRINGSTRING
BMS1 protein (Phaeodactylum tricornutum) - STRING interaction network
"BMS1" - Ribosome biogenesis protein BMS1 in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS1Ribosome biogenesis protein BMS1 (1096 aa)    
Predicted Functional Partners:
Phatr46837
Predicted protein (997 aa)
     
 
  0.999
Phatr46994
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA (730 aa)
     
 
  0.999
Phatr25666
Predicted protein (885 aa)
     
 
  0.999
Phatr46516
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1051 aa)
     
 
  0.998
Phatr46012
Predicted protein (2229 aa)
     
 
  0.998
Phatr11703
Predicted protein (820 aa)
     
 
  0.998
Phatr15354
Predicted protein (300 aa)
     
 
  0.998
Phatr15481
Predicted protein (482 aa)
     
 
  0.998
SAS1
Regulator of chromatin silencing (624 aa)
     
 
  0.998
Phatr44242
Predicted protein (890 aa)
     
 
  0.998
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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