STRINGSTRING
Phatr42844 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42844" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42844Predicted protein (695 aa)    
Predicted Functional Partners:
Phatr43574
Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (499 aa)
     
        0.779
Phatr47058
Predicted protein (606 aa)
     
        0.711
Phatr42570
Predicted protein (1267 aa)
     
        0.678
Phatr19647
Predicted protein (354 aa)
     
        0.660
Phatr42495
Predicted protein (1233 aa)
     
        0.659
Phatr6258
Predicted protein (205 aa)
     
        0.656
Phatr16814
Predicted protein (662 aa)
     
        0.655
Phatr47176
Predicted protein (435 aa)
     
 
  0.651
Phatr25394
Predicted protein (528 aa)
     
 
  0.651
Phatr11703
Predicted protein (820 aa)
     
        0.650
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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