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Phatr42907 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42907" - Acyl-coenzyme A dehydrogenase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42907Acyl-coenzyme A dehydrogenase (443 aa)    
Predicted Functional Partners:
Phatr44815
Predicted protein (401 aa)
   
  0.902
FAO1
Peroxisomal bifunctional enzyme (767 aa)
   
 
  0.668
Phatr35240
Predicted protein (684 aa)
   
 
  0.668
Phatr44982
Predicted protein (203 aa)
   
 
  0.619
KCT1
Beta-ketoacyl-coa thiolase (386 aa)
   
 
  0.498
DEI1
Delta-3,5-delta-2,4-dienoyl-CoA isomerase (291 aa)
   
 
  0.495
KCT3
Beta-ketoacyl-CoA thiolase (457 aa)
   
 
  0.490
HAD2
3-hydroxyacyl-coenzyme A dehydrogenase (329 aa)
       
  0.478
FABZ
3R-hydroxyacyl-[acyl carrier protein] dehydrase (197 aa)
         
  0.436
Phatr5527
Predicted protein (170 aa)
   
 
  0.436
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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