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STRINGSTRING
Phatr42910 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42910" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42910Predicted protein (491 aa)    
Predicted Functional Partners:
Phatr12985
Predicted protein (132 aa)
     
 
  0.693
Phatr19103
Predicted protein (102 aa)
   
 
  0.603
Phatr11799
Predicted protein (84 aa)
     
 
  0.547
Phatr8720
Predicted protein; Belongs to the bacterial ribosomal protein bL17 family (116 aa)
   
 
  0.534
Phatr27659
Predicted protein; Belongs to the bacterial ribosomal protein bL17 family (157 aa)
   
 
  0.534
Phatr29097
Predicted protein; Belongs to the universal ribosomal protein uS7 family (225 aa)
   
 
  0.528
Phatr9894
Predicted protein (140 aa)
   
      0.518
Phatr30486
Predicted protein; Belongs to the universal ribosomal protein uS13 family (146 aa)
   
 
  0.509
Phatr9259
Predicted protein (92 aa)
   
      0.485
Phatr47449
Predicted protein (236 aa)
   
 
  0.480
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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