STRINGSTRING
Phatr42928 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42928" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42928Predicted protein (464 aa)    
Predicted Functional Partners:
Phatr30925
Predicted protein (601 aa)
     
  0.771
Phatr47116
Predicted protein (559 aa)
     
  0.733
Phatr10199
Predicted protein (203 aa)
     
  0.717
Phatr54175
Predicted protein (420 aa)
     
  0.658
Phatr34324
Predicted protein (330 aa)
       
  0.604
Phatr12779
Predicted protein (89 aa)
         
  0.571
RPC157
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1281 aa)
       
  0.568
Phatr10148
Predicted protein (129 aa)
       
  0.559
RPC11
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (111 aa)
         
  0.538
Phatr25420
Predicted protein (228 aa)
         
  0.521
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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