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STRINGSTRING
Phatr42932 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42932" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42932Predicted protein (1193 aa)    
Predicted Functional Partners:
Phatr17967
Putative tRNA (cytidine(32)/guanosine(34)-2’-O)-methyltransferase; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (315 aa)
     
 
  0.968
Phatr49134
Predicted protein (2097 aa)
     
 
  0.883
Phatr31975
Predicted protein (397 aa)
       
 
  0.864
Phatr5702
Predicted protein (227 aa)
           
  0.812
Phatr11894
Predicted protein (209 aa)
     
 
  0.718
Phatr25666
Predicted protein (885 aa)
     
        0.716
Phatr42570
Predicted protein (1267 aa)
     
        0.673
RPC157
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1281 aa)
     
   
  0.671
Phatr11703
Predicted protein (820 aa)
     
     
0.636
Phatr32036
Predicted protein (801 aa)
     
        0.612
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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