STRINGSTRING
Phatr42935 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42935" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42935Predicted protein (588 aa)    
Predicted Functional Partners:
MCM5
Predicted protein (667 aa)
     
  0.994
Phatr45115
Predicted protein (1834 aa)
     
  0.993
CDC6
Predicted protein (1107 aa)
     
  0.992
Phatr981
Predicted protein (467 aa)
     
  0.988
MCM2
Predicted protein (808 aa)
     
  0.988
MCM3
Predicted protein (551 aa)
     
  0.988
MCM7
Predicted protein (618 aa)
     
  0.984
Phatr9344
Predicted protein (389 aa)
     
  0.981
RPA1
Replication protein a large 70 kD subunit (606 aa)
     
  0.981
Phatr32848
Predicted protein (685 aa)
     
  0.971
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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