STRINGSTRING
Phatr42944 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42944" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42944Predicted protein (1422 aa)    
Predicted Functional Partners:
Phatr50228
Predicted protein (904 aa)
     
  0.991
Phatr10199
Predicted protein (203 aa)
     
  0.991
Phatr45009
Predicted protein (498 aa)
       
  0.985
Phatr47054
Predicted protein (450 aa)
     
  0.985
Phatr6586
Predicted protein (152 aa)
     
 
  0.956
Phatr52450
Predicted protein (154 aa)
       
 
  0.945
Phatr45764
Predicted protein (1603 aa)
     
  0.724
Phatr45703
Predicted protein (2426 aa)
     
  0.724
PHATR_2957
Predicted protein (338 aa)
     
 
0.711
Phatr1785
Predicted protein (433 aa)
     
 
  0.700
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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