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Phatr42975 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42975" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42975Predicted protein (689 aa)    
Predicted Functional Partners:
Phatr47275
Predicted protein (1055 aa)
     
 
  0.988
Phatr44037
Predicted protein (1291 aa)
     
 
  0.974
Phatr9033
Predicted protein (268 aa)
     
  0.891
SNAP
Predicted protein (313 aa)
     
  0.847
SytB
Predicted protein (260 aa)
     
  0.828
Phatr43038
Predicted protein (1112 aa)
     
 
  0.823
SybD
Predicted protein (274 aa)
       
  0.809
SybA
Predicted protein (226 aa)
       
  0.809
Phatr43103
Predicted protein (1740 aa)
     
 
  0.805
SybF
Predicted protein (200 aa)
       
  0.776
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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