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Phatr42978 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42978" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42978Predicted protein (632 aa)    
Predicted Functional Partners:
Phatr18132
Predicted protein (377 aa)
     
 
  0.629
Rab7
Predicted protein (237 aa)
       
  0.590
Phatr40171
Predicted protein (364 aa)
       
  0.590
SNAP
Predicted protein (313 aa)
     
 
  0.550
Phatr48390
Predicted protein (1780 aa)
     
      0.542
Phatr9649
Predicted protein (102 aa)
       
 
  0.534
Phatrdraft1558
Predicted protein (526 aa)
     
   
  0.533
Phatrdraft1554
Predicted protein (521 aa)
     
   
  0.533
Phatr50210
Predicted protein (521 aa)
     
   
  0.533
Phatr50206
Predicted protein (223 aa)
     
   
  0.533
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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