STRINGSTRING
Phatr43008 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43008" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43008Predicted protein (629 aa)    
Predicted Functional Partners:
Phatr44715
Predicted protein (786 aa)
     
  0.984
Phatr43498
Predicted protein (807 aa)
     
  0.981
Phatr44776
Predicted protein (851 aa)
     
  0.850
Phatr42749
Predicted protein (1002 aa)
     
  0.837
Phatr14850
Predicted protein (653 aa)
     
  0.657
Phatr32759
Predicted protein (879 aa)
     
  0.633
Phatr51303
Predicted protein (222 aa)
       
      0.630
Phatr50446
Predicted protein (1157 aa)
     
  0.626
COPgamma
Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (910 aa)
     
  0.622
VPS45
Predicted protein (555 aa)
     
  0.618
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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