STRINGSTRING
Phatr43016 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43016" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43016Predicted protein (1066 aa)    
Predicted Functional Partners:
Phatr31919
Predicted protein (305 aa)
     
 
  0.855
Phatr23324
Predicted protein (176 aa)
     
 
  0.844
rpl2
Predicted protein (257 aa)
   
 
  0.844
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
   
  0.816
Phatr21513
Predicted protein (1035 aa)
   
   
 
0.811
Phatr11088
Predicted protein (1086 aa)
     
 
  0.808
Phatr19615
Predicted protein (121 aa)
     
 
  0.784
Phatr13361
Predicted protein (389 aa)
   
 
  0.765
Phatr10617
Predicted protein (229 aa)
   
 
  0.765
Phatr28359
Predicted protein (229 aa)
     
 
  0.764
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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