STRINGSTRING
Phatr43033 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43033" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43033Predicted protein (641 aa)    
Predicted Functional Partners:
hNpl4
Predicted protein (473 aa)
     
 
  0.965
sUfd1
Predicted protein (191 aa)
     
 
  0.920
hUfd1
Predicted protein (202 aa)
     
 
  0.920
Phatr8950
Predicted protein (252 aa)
     
 
  0.810
Phatr8754
Predicted protein (165 aa)
     
 
  0.810
Phatr55229
Predicted protein (379 aa)
     
 
  0.810
hCdc48
Predicted protein (800 aa)
     
 
  0.810
Phatr4937
Predicted protein (217 aa)
     
 
  0.810
Phatr42434
Predicted protein (484 aa)
     
 
  0.810
Phatr41850
Predicted protein (685 aa)
     
 
  0.810
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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