STRINGSTRING
Phatr43088 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43088" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43088Predicted protein (1279 aa)    
Predicted Functional Partners:
Phatr9639
Predicted protein (545 aa)
     
  0.890
Phatr11720
Predicted protein (69 aa)
     
  0.793
Phatr32311
Predicted protein (242 aa)
 
            0.631
Phatr17772
Predicted protein (1313 aa)
       
      0.540
Phatr49524
Predicted protein (926 aa)
       
  0.531
Phatr47389
Predicted protein (591 aa)
       
  0.531
Phatr7848
Predicted protein (135 aa)
       
      0.501
ACC2
Biotin carboxylase (2282 aa)
       
      0.463
Phatr30282
Predicted protein (341 aa)
     
 
  0.441
Phatr15031
Predicted protein (118 aa)
     
 
  0.441
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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