STRINGSTRING
Phatr43103 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43103" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43103Predicted protein (1740 aa)    
Predicted Functional Partners:
Phatr44037
Predicted protein (1291 aa)
     
 
  0.969
Phatr47275
Predicted protein (1055 aa)
     
 
  0.968
Phatr43038
Predicted protein (1112 aa)
     
 
  0.811
Phatr42975
Predicted protein (689 aa)
     
 
  0.805
Phatr45250
Predicted protein (743 aa)
     
      0.682
VPS45
Predicted protein (555 aa)
     
 
  0.569
Phatr6635
Predicted protein (159 aa)
       
 
  0.505
Rab5c
Hypothetical protein (181 aa)
       
 
  0.505
Rab5a
Predicted protein (201 aa)
       
 
  0.505
Phatr50446
Predicted protein (1157 aa)
     
 
  0.421
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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