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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Tpt4 protein (Phaeodactylum tricornutum) - STRING interaction network
"Tpt4" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpt4Predicted protein (367 aa)    
Predicted Functional Partners:
Phatr38686
Predicted protein (386 aa)
     
   
  0.913
Phatr15125
Predicted protein (311 aa)
     
   
  0.787
GMD1
Gdp-mannose 4,6-dehydratase (363 aa)
     
   
  0.746
Phatr42638
Predicted protein (494 aa)
     
   
  0.702
Phatr13167
Predicted protein (222 aa)
     
   
  0.702
Phatr9609
Predicted protein (322 aa)
     
   
  0.672
Phatr45630
Predicted protein (355 aa)
     
   
  0.672
Phatr45312
Predicted protein (543 aa)
           
  0.579
Phatr10976
Mannosyltransferase (370 aa)
     
   
  0.489
Phatr50257
Predicted protein (900 aa)
     
   
  0.485
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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