STRINGSTRING
Phatr43288 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43288" - Prephenate dehydrogenase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43288Prephenate dehydrogenase (395 aa)    
Predicted Functional Partners:
Phatr3267
Predicted protein (304 aa)
 
 
  0.865
Phatrdraft1682
Anthranilate synthase (927 aa)
         
  0.845
Phatr17238
Anthranilate synthase (958 aa)
         
  0.845
Phatrdraft870
Predicted protein (457 aa)
     
  0.841
METH
Methionine synthase (1245 aa)
       
  0.813
Phatr43429
Chorismate synthase (442 aa)
     
  0.790
GDCP
Glycine decarboxylase p-protein (1005 aa)
       
  0.721
Phatr41702
Predicted protein (671 aa)
         
  0.719
Phatrdraft417
Probable chorismate mutase (288 aa)
     
  0.712
Phatr43277
Probable chorismate mutase (299 aa)
     
  0.712
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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