STRINGSTRING
Phatr43362 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43362" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43362Predicted protein (398 aa)    
Predicted Functional Partners:
SMC3
Predicted protein (1232 aa)
     
  0.883
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
     
  0.871
Phatr44595
Mitotic cohesin (663 aa)
       
  0.842
Phatr54417
Cohesin (1455 aa)
     
  0.754
Pt-MAD2
Mitotic checkpoint protein with homology with MAD2 (215 aa)
     
 
  0.728
RFC4
Predicted protein (350 aa)
     
  0.721
SMC1
Predicted protein (1237 aa)
     
  0.714
Phatr50138
Predicted protein (1699 aa)
     
 
  0.691
Phatr43994
Predicted protein (942 aa)
     
  0.651
Phatr45690
Predicted protein (1015 aa)
     
 
  0.644
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (4%) [HD]