STRINGSTRING
Phatr43378 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43378" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43378Predicted protein (1934 aa)    
Predicted Functional Partners:
Phatr48350
Predicted protein (1773 aa)
     
   
  0.672
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
     
        0.639
Phatr24739
Predicted protein (1594 aa)
     
        0.639
Phatrdraft1636
Predicted protein (737 aa)
     
   
  0.621
Phatrdraft1635
Predicted protein (693 aa)
     
   
  0.621
Phatrdraft1631
Cell surface receptor protein (1195 aa)
     
   
  0.621
Phatrdraft1624
Predicted protein (1147 aa)
     
   
  0.621
Phatrdraft1623
Predicted protein (1177 aa)
     
   
  0.621
Phatrdraft1284
Predicted protein (827 aa)
     
   
  0.621
Phatrdraft1265
Predicted protein (1138 aa)
     
   
  0.621
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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