STRINGSTRING
Phatr43431 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43431" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43431Predicted protein (471 aa)    
Predicted Functional Partners:
Phatr46712
Predicted protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (276 aa)
     
  0.983
Phatr14138
Predicted protein (245 aa)
     
  0.983
Phatr43446
Predicted protein (747 aa)
     
  0.902
Phatr47058
Predicted protein (606 aa)
     
        0.790
PHATR_3578
Pseudouridine synthase (293 aa)
     
 
  0.702
Phatr9235
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1147 aa)
     
        0.659
Phatr45871
Predicted protein (944 aa)
     
        0.637
Phatr13281
Predicted protein; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (181 aa)
     
        0.628
Phatr29217
Predicted protein (406 aa)
     
        0.624
Phatr27735
Predicted protein (538 aa)
     
        0.613
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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