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Phatr43459 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43459" - Splicing coactivator subunit-like protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43459Splicing coactivator subunit-like protein (490 aa)    
Predicted Functional Partners:
Phatrdraft1638
Predicted protein (548 aa)
       
  0.962
Phatr34712
Predicted protein (662 aa)
     
    0.962
Phatr19982
Predicted protein (2347 aa)
     
  0.962
Phatr54743
Predicted protein (347 aa)
       
  0.960
Phatr12309
Predicted protein (134 aa)
       
  0.960
Phatr11593
Predicted protein (324 aa)
       
  0.838
Phatr14572
Predicted protein (219 aa)
       
    0.814
MER3
Mer3 meiotic cross-over helicase (154 aa)
       
  0.808
Phatr25
Predicted protein (1589 aa)
       
  0.808
Phatr21388
Predicted protein (2189 aa)
       
  0.808
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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