STRINGSTRING
Phatr43559 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43559" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43559Predicted protein (391 aa)    
Predicted Functional Partners:
Phatr3351
Predicted protein (281 aa)
     
 
  0.596
Phatr19122
Predicted protein (322 aa)
     
 
  0.596
FABD
Malonyl-CoA-ACP transacylase (352 aa)
     
      0.555
Phatr35185
Predicted protein (448 aa)
 
   
  0.535
Phatr42826
Predicted protein (1192 aa)
   
   
  0.495
Phatr2271
GTP-binding protein engA; GTPase that plays an essential role in the late steps of ribosome biogenesis (489 aa)
   
   
  0.490
Phatr17172
Predicted protein (551 aa)
   
   
  0.490
Phatr29702
Predicted protein (878 aa)
           
  0.461
Phatr45509
Predicted protein (723 aa)
         
  0.448
Phatr17029
Predicted protein (329 aa)
   
   
  0.443
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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