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STRINGSTRING
Phatr43560 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43560" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43560Predicted protein (361 aa)    
Predicted Functional Partners:
Phatr44982
Predicted protein (203 aa)
   
   
  0.546
HAD1
3-hydroxyacyl-coenzyme A dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family (256 aa)
     
        0.475
NRPS
Non ribosomal peptide synthase (1367 aa)
   
   
  0.433
Phatr51092
Glutamine synthetase (416 aa)
         
  0.410
Rab18
Predicted protein (213 aa)
           
  0.400
Rab1b
Predicted protein (208 aa)
           
  0.400
Rab1a
Predicted protein (203 aa)
           
  0.400
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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