STRINGSTRING
Phatr43574 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43574" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43574Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (499 aa)    
Predicted Functional Partners:
Phatr16814
Predicted protein (662 aa)
     
  0.999
Phatr14145
Predicted protein (516 aa)
     
  0.998
Phatr21557
Predicted protein (348 aa)
     
 
  0.998
Phatr12144
Predicted protein (220 aa)
     
  0.995
Phatr47176
Predicted protein (435 aa)
     
 
  0.993
Phatr25394
Predicted protein (528 aa)
     
 
  0.993
Phatr35966
Predicted protein (488 aa)
     
 
  0.991
Phatr45356
Predicted protein (479 aa)
     
 
  0.991
Phatr12679
Predicted protein (290 aa)
     
  0.990
Phatr2182
Predicted protein (360 aa)
     
 
  0.990
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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