STRINGSTRING
Phatr43579 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43579" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43579Predicted protein (701 aa)    
Predicted Functional Partners:
Phatr43504
Predicted protein (977 aa)
     
  0.694
Phatr43574
Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (499 aa)
     
 
  0.613
Phatr16814
Predicted protein (662 aa)
     
  0.536
Phatr12679
Predicted protein (290 aa)
     
 
    0.532
Phatr14145
Predicted protein (516 aa)
     
 
  0.527
Phatr45441
Predicted protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (379 aa)
     
 
    0.514
Phatr15354
Predicted protein (300 aa)
     
  0.493
Phatr18258
Predicted protein (743 aa)
     
 
  0.472
Phatr46837
Predicted protein (997 aa)
     
 
    0.463
Phatr25666
Predicted protein (885 aa)
     
 
    0.463
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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