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STRINGSTRING
Phatr43596 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43596" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43596Predicted protein (779 aa)    
Predicted Functional Partners:
Phatr42643
Predicted protein (1238 aa)
     
 
  0.927
Phatr15121
Predicted protein (450 aa)
     
   
  0.809
Phatr33400
Predicted protein (133 aa)
     
   
  0.646
Phatr24748
Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs (413 aa)
     
   
  0.618
hNpl4
Predicted protein (473 aa)
     
 
  0.613
Phatr10102
Predicted protein (214 aa)
     
   
  0.534
sUfd1
Predicted protein (191 aa)
     
 
  0.435
hUfd1
Predicted protein (202 aa)
     
 
  0.435
Phatr27135
Predicted protein (98 aa)
           
  0.407
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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