STRINGSTRING
Phatr43626 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43626" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43626Predicted protein (341 aa)    
Predicted Functional Partners:
rps19
Predicted protein (147 aa)
     
 
  0.873
Phatr19103
Predicted protein (102 aa)
   
   
  0.706
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
   
   
  0.519
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
   
   
  0.519
Phatr40200
Predicted protein (710 aa)
   
   
  0.483
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
   
  0.480
Phatr25375
Predicted protein (201 aa)
   
   
  0.479
Phatr14713
Predicted protein (137 aa)
   
   
  0.479
Phatr17772
Predicted protein (1313 aa)
   
   
  0.444
Phatr2182
Predicted protein (360 aa)
   
   
  0.441
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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