STRINGSTRING
Phatr43627 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43627" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43627Predicted protein (1396 aa)    
Predicted Functional Partners:
Phatr50848
Predicted protein (544 aa)
     
  0.985
Phatr43447
Predicted protein (671 aa)
     
      0.691
Phatr19191
Predicted protein (289 aa)
       
 
  0.585
Phatr39335
Predicted protein (204 aa)
       
      0.580
Phatrdraft955
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1674 aa)
     
      0.552
Phatr9235
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1147 aa)
     
      0.529
Phatr8694
Predicted protein (63 aa)
       
 
  0.527
Phatr14032
Predicted protein (467 aa)
     
        0.519
Phatr47058
Predicted protein (606 aa)
     
        0.497
Phatr7026
Predicted protein (102 aa)
       
 
  0.472
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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