STRINGSTRING
Phatr43655 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43655" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43655Predicted protein (491 aa)    
Predicted Functional Partners:
Phatr45431
Predicted protein (1158 aa)
     
  0.848
Phatr43504
Predicted protein (977 aa)
     
  0.696
APC6
Predicted protein (381 aa)
       
  0.671
Phatr50624
Putative uncharacterized protein (603 aa)
     
 
  0.648
Phatr42753
Predicted protein (1678 aa)
     
 
  0.645
APC10
Predicted protein (148 aa)
       
  0.631
RPN7
Regulatory proteasome non-atpase subunit 7 (330 aa)
       
    0.620
DDB1
Damage-specific DNA binding protein 1 (1284 aa)
     
  0.614
Phatr28743
Predicted protein (203 aa)
       
 
  0.608
Phatr52285
Cleavage and polyadenylation specific factor (1001 aa)
       
 
  0.587
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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