STRINGSTRING
Phatr43680 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43680" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43680Predicted protein (1458 aa)    
Predicted Functional Partners:
Phatr13237
Predicted protein (241 aa)
       
 
  0.966
CATR1
Caltractin (151 aa)
       
 
  0.963
CATR2
Caltractin (192 aa)
       
 
  0.963
Phatr43752
Predicted protein (2360 aa)
     
 
  0.895
Phatr44632
Predicted protein (1440 aa)
     
 
  0.816
helicase_5
Predicted protein (428 aa)
       
 
  0.776
Phatr4700
Predicted protein (325 aa)
       
 
  0.747
Phatr35556
Predicted protein (1902 aa)
     
 
  0.714
Phatr35311
Predicted protein (1849 aa)
     
 
  0.703
Phatr47393
Predicted protein (829 aa)
     
 
  0.691
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (5%) [HD]