STRINGSTRING
Phatr43730 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43730" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43730Predicted protein (229 aa)    
Predicted Functional Partners:
Phatr52678
DNA polymerase (2155 aa)
     
  0.977
Phatrdraft310
Predicted protein (83 aa)
     
  0.974
Phatr7801
Predicted protein (87 aa)
     
  0.974
Phatr50274
Predicted protein (574 aa)
     
  0.930
Phatr51604
Predicted protein (509 aa)
     
  0.901
Phatr47011
Predicted protein (1431 aa)
     
  0.901
NURF-140
Imitation switch isoform 1, alias nucleosome remodeling factor 140 kDa subunit (1023 aa)
     
  0.901
Phatr231
Predicted protein (970 aa)
     
  0.901
POLA
DNA polymerase (1147 aa)
     
  0.780
Phatr54677
DNA polymerase (1087 aa)
     
  0.775
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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