STRINGSTRING
Phatr43732 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43732" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43732Predicted protein; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria (1504 aa)    
Predicted Functional Partners:
Phatr23838
Predicted protein (1879 aa)
     
      0.675
Phatr50058
Predicted protein (1312 aa)
     
      0.674
Phatr11441
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1212 aa)
     
      0.672
ME1
Malic enzyme (560 aa)
       
      0.624
Phatr51970
Malic enzyme (555 aa)
       
      0.624
Phatrdraft913
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP (386 aa)
       
      0.565
ERCC2
Xeroderma pigmentosum group D complementing protein (782 aa)
     
      0.557
Phatr46522
Predicted protein (526 aa)
     
 
  0.536
Phatr16281
Predicted protein (84 aa)
       
 
  0.516
Phatr9235
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1147 aa)
     
      0.475
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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