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Phatr43802 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43802" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43802Predicted protein (1189 aa)    
Predicted Functional Partners:
Phatr50132
Predicted protein (1477 aa)
     
  0.754
Phatr13520
Predicted protein (127 aa)
       
  0.742
RPA1
Replication protein a large 70 kD subunit (606 aa)
       
  0.705
Phatr47388
Predicted protein (1057 aa)
     
 
  0.676
Phatr15555
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1706 aa)
     
  0.617
MRE11
Predicted protein (550 aa)
   
  0.604
Phatr54577
Helicase_2 (790 aa)
     
  0.597
Phatr44062
Predicted protein (1943 aa)
     
  0.597
Phatr41167
Predicted protein (1469 aa)
     
  0.597
Phatr42892
Predicted protein (4067 aa)
     
  0.585
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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