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Phatr43830 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43830" - Vacuolar protein sorting-associated protein 35 in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43830Vacuolar protein sorting-associated protein 35 (1712 aa)    
Predicted Functional Partners:
Phatr12113
Predicted protein (284 aa)
     
  0.991
Phatr17936
Predicted protein (206 aa)
     
  0.988
Phatr45401
Predicted protein (830 aa)
     
  0.968
Phatr3137
Predicted protein (392 aa)
     
  0.968
Phatr44534
Predicted protein (417 aa)
     
 
  0.735
Phatr38893
Predicted protein (174 aa)
       
 
  0.707
Rab7
Predicted protein (237 aa)
     
 
  0.651
Phatr40171
Predicted protein (364 aa)
     
 
  0.651
CHC
Predicted protein; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1702 aa)
     
 
  0.650
Phatr30019
Predicted protein (299 aa)
       
      0.547
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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