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Phatr43904 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43904" - Phytoene desaturase. zeta-carotene desaturase. bacterial-like protein in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43904Phytoene desaturase. zeta-carotene desaturase. bacterial-like protein (696 aa)    
Predicted Functional Partners:
PDS2
Phytoene desaturase (589 aa)
       
  0.876
PDS1
Phytoene dehydrogenase (597 aa)
       
  0.876
PSY
Phytoene synthase (309 aa)
 
 
  0.820
Phatr48985
Predicted protein (2198 aa)
   
 
  0.670
Phatr33756
Predicted protein (711 aa)
   
 
  0.670
Phatr13160
Predicted protein (314 aa)
   
 
  0.670
Phatr33017
Predicted protein; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX (711 aa)
   
   
  0.665
Phatr49325
Predicted protein (343 aa)
         
  0.533
Phatr47271
Predicted protein (330 aa)
         
  0.533
Phatr19000
Farnesyltranstransferase (337 aa)
         
  0.533
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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