STRINGSTRING
Phatr43905 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43905" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43905Predicted protein (1038 aa)    
Predicted Functional Partners:
Phatr50132
Predicted protein (1477 aa)
     
  0.754
RPA1
Replication protein a large 70 kD subunit (606 aa)
       
  0.705
Phatr49527
Predicted protein (1089 aa)
     
 
  0.556
Phatr49526
Predicted protein (1633 aa)
     
 
  0.556
Phatr13520
Predicted protein (127 aa)
       
  0.556
Phatr27851
Annotation not available (139 aa)
       
    0.542
Phatr44708
Predicted protein (790 aa)
     
  0.533
Phatr42892
Predicted protein (4067 aa)
     
  0.533
Phatr30282
Predicted protein (341 aa)
     
  0.533
Phatr21660
Predicted protein (2400 aa)
     
  0.533
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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