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Phatr43913 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43913" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43913Predicted protein; Involved in autophagic vesicle formation (330 aa)    
Predicted Functional Partners:
Phatr43401
Predicted protein (564 aa)
       
  0.996
Phatr41667
Autophagy-related protein 3 (302 aa)
       
  0.980
Phatr50303
Predicted protein (124 aa)
       
  0.856
Phatr9342
Predicted protein (382 aa)
     
  0.739
Phatr36572
Predicted protein (955 aa)
       
 
  0.613
Phatr49312
Predicted protein (1592 aa)
         
  0.604
Phatr30282
Predicted protein (341 aa)
         
  0.604
Phatr15031
Predicted protein (118 aa)
         
  0.604
Phatr21660
Predicted protein (2400 aa)
         
  0.561
Phatr31423
Predicted protein (357 aa)
     
  0.547
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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