STRINGSTRING
Phatr43917 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43917" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43917Predicted protein (784 aa)    
Predicted Functional Partners:
Phatrdraft1638
Predicted protein (548 aa)
       
      0.685
Phatrdraft998
Predicted protein (230 aa)
       
      0.638
PtRabX1
Predicted protein (230 aa)
       
      0.638
RabX2
Predicted protein (229 aa)
       
      0.638
Sec4
Predicted protein (207 aa)
       
      0.638
Phatr9639
Predicted protein (545 aa)
     
  0.585
Ras1
Predicted protein (191 aa)
       
  0.552
Phatr16891
Predicted protein (450 aa)
     
  0.551
Phatr13511
Predicted protein (939 aa)
     
  0.551
CHC
Predicted protein; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1702 aa)
     
  0.522
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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