STRINGSTRING
Phatr43972 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr43972" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr43972Predicted protein (536 aa)    
Predicted Functional Partners:
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
   
   
  0.500
Phatr24739
Predicted protein (1594 aa)
   
   
  0.500
Phatr3296
Predicted protein (380 aa)
   
          0.476
Phatr2738
Predicted protein (235 aa)
   
          0.470
Phatr11883
Predicted protein (357 aa)
   
        0.453
FtrB
Reductase of ferredoxin thioredoxin reductase (121 aa)
   
     
  0.447
Phatr8310
Predicted protein (77 aa)
   
          0.432
Phatr19901
Predicted protein (900 aa)
         
  0.430
Phatr37858
Predicted protein (398 aa)
   
          0.430
Phatr31741
Predicted protein (148 aa)
   
          0.419
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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