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PetJ protein (Phaeodactylum tricornutum) - STRING interaction network
"PetJ" - Cytochrome c6, cytochrome c553 in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PetJCytochrome c6, cytochrome c553 (133 aa)    
Predicted Functional Partners:
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
         
  0.738
Phatr24739
Predicted protein (1594 aa)
         
  0.738
petC
Cytochrome b6-f complex iron-sulfur subunit (217 aa)
       
  0.667
Phatr13358
Cytochrome b6-f complex iron-sulfur subunit (178 aa)
       
  0.667
Phatr12233
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (179 aa)
       
  0.667
Phatr14307
Predicted protein (90 aa)
   
   
  0.580
Phatr26293
Photosystem II 12 kDa extrinsic protein, chloroplastic (148 aa)
   
     
  0.534
Phatr48952
Predicted protein (791 aa)
       
  0.508
FtrB
Reductase of ferredoxin thioredoxin reductase (121 aa)
   
     
  0.498
Phatr31741
Predicted protein (148 aa)
   
          0.498
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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