STRINGSTRING
Phatr44108 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr44108" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr44108Predicted protein (358 aa)    
Predicted Functional Partners:
TFIIH-p44
Suppressor of stem-loop protein 1 (413 aa)
     
  0.982
ERCC2
Xeroderma pigmentosum group D complementing protein (782 aa)
     
  0.981
Phatr20574
Predicted protein (720 aa)
       
  0.975
MAT1
Predicted protein (294 aa)
       
  0.975
Phatr36847
Predicted protein (111 aa)
       
  0.967
Phatr10199
Predicted protein (203 aa)
       
  0.954
Phatr43960
Predicted protein (641 aa)
     
  0.934
Phatr46429
Predicted protein (312 aa)
       
  0.893
Phatr3295
Predicted protein (156 aa)
     
  0.846
Phatr12118
Predicted protein (137 aa)
     
  0.846
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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