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RabX2 protein (Phaeodactylum tricornutum) - STRING interaction network
"RabX2" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RabX2Predicted protein (229 aa)    
Predicted Functional Partners:
RabGDI
Predicted protein (446 aa)
       
 
  0.875
Rab18
Predicted protein (213 aa)
   
 
0.756
Rab1b
Predicted protein (208 aa)
   
 
0.749
Rab1a
Predicted protein (203 aa)
   
 
0.745
Arf1
Predicted protein (184 aa)
     
  0.668
Phatr43871
Predicted protein (673 aa)
       
 
  0.664
Phatr573
Predicted protein (665 aa)
       
      0.638
Phatr44344
Predicted protein (980 aa)
       
      0.638
Phatr43917
Predicted protein (784 aa)
       
      0.638
Phatr9649
Predicted protein (102 aa)
       
      0.634
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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