• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
RabX2 protein (Phaeodactylum tricornutum) - STRING interaction network
"RabX2" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RabX2Predicted protein (229 aa)    
Predicted Functional Partners:
RabGDI
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family (446 aa)
     
 
  0.877
Arf1
Predicted protein; Belongs to the small GTPase superfamily. Arf family (184 aa)
     
 
  0.805
Phatr45340
Predicted protein (1608 aa)
     
 
  0.803
CHC
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1702 aa)
     
 
  0.778
Phatr47327
Predicted protein (786 aa)
       
 
  0.772
Phatr42505
Predicted protein (1198 aa)
     
 
  0.750
Phatr43641
Predicted protein (617 aa)
     
 
  0.702
Phatr12157
Predicted protein (330 aa)
     
 
  0.680
Phatr7164
Predicted protein; Belongs to the PI3/PI4-kinase family (170 aa)
 
   
 
  0.666
Phatr21501
Predicted protein; Belongs to the PI3/PI4-kinase family (175 aa)
 
   
 
  0.666
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (7%) [HD]