STRINGSTRING
Phatr44298 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr44298" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr44298Predicted protein (1736 aa)    
Predicted Functional Partners:
Phatr9829
Predicted protein (181 aa)
     
  0.993
Phatr44459
Predicted protein (203 aa)
     
  0.993
Phatr9731
Predicted protein (155 aa)
     
  0.982
Phatr25743
Predicted protein (414 aa)
     
  0.981
Phatr25184
Predicted protein (623 aa)
     
  0.911
Phatr23959
Predicted protein; Binds the poly(A) tail of mRNA (605 aa)
     
  0.892
Phatr26975
Predicted protein; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (701 aa)
     
  0.883
Phatr46320
Predicted protein; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (1022 aa)
     
  0.807
Phatr13520
Predicted protein (127 aa)
       
  0.802
Phatr13095
Predicted protein (97 aa)
     
  0.800
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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