STRINGSTRING
Pt-Spc98 protein (Phaeodactylum tricornutum) - STRING interaction network
"Pt-Spc98" - Spc98 in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pt-Spc98Spc98 (843 aa)    
Predicted Functional Partners:
Gamma-tub
Predicted protein; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome (468 aa)
     
  0.991
Spc97
Spc97 (1274 aa)
     
0.987
Phatr54534
Predicted protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (451 aa)
     
  0.908
Phatr21122
Predicted protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (447 aa)
     
  0.902
Phatr42276
Predicted protein (1263 aa)
       
      0.787
Phatr43664
Predicted protein (655 aa)
     
   
  0.689
Phatr47936
Predicted protein (2798 aa)
     
  0.632
EB1
Predicted protein (256 aa)
     
  0.594
CATR1
Caltractin (151 aa)
     
 
  0.582
CATR2
Caltractin (192 aa)
     
 
  0.582
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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